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raw microarray data (.cel files  (Thermo Fisher)


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    Thermo Fisher raw microarray data (.cel files
    Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent <t>microarray</t> experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.
    Raw Microarray Data (.Cel Files, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+raw+data+(cel+files)/pmc02045681-248-2-5
    Average 90 stars, based on 1 article reviews
    raw microarray data (.cel files - by Bioz Stars, 2026-10
    90/100 stars

    Images

    1) Product Images from "Genomic expression during human myelopoiesis"

    Article Title: Genomic expression during human myelopoiesis

    Journal: BMC Genomics

    doi: 10.1186/1471-2164-8-264

    Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.
    Figure Legend Snippet: Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Techniques Used: Expressing, Microarray

    Related Articles

    other:

    Article Title: HENA, heterogeneous network-based data set for Alzheimer’s disease
    Article Snippet: The raw .CEL files and annotations of Affymetrix GeneChip Human Genome U133 Plus 2.0 microarray data sets – were downloaded from ArrayExpress and preprocessed according to MEM standard operation pipeline .

    Article Title: Influence of a Short-Term Iron-Deficient Diet on Hepatic Gene Expression Profiles in Rats
    Article Snippet: We quantified the raw microarray data (Affymetrix CEL files) using a robust multiarray average (RMA).

    Gene Expression:

    Article Title: LncRNA Profile Study Reveals a Three-LncRNA Signature Associated With the Pathological Complete Response Following Neoadjuvant Chemotherapy in Breast Cancer
    Article Snippet: .. The raw CEL files were downloaded from GEO, all gene expression data were generated with Affymetrix U133A gene chips and normalized with RMA algorithm using the ‘affy’ R package. ..

    Article Title: Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray
    Article Snippet: .. A gene expression index was build for stress treatments comparison in a manner reminiscent of the Hormonometer algorithm : Affymetrix ATH1 microarray CEL files (containing raw data) of stress related experiments were retrieved from GEO. .. They were imported into Partek GS (Partek, Inc.) , RMA normalized and then the fold-change (treatment/control) of the genes and the statistical significance (using one-way ANOVA test) of that change were calculated.

    Generated:

    Article Title: LncRNA Profile Study Reveals a Three-LncRNA Signature Associated With the Pathological Complete Response Following Neoadjuvant Chemotherapy in Breast Cancer
    Article Snippet: .. The raw CEL files were downloaded from GEO, all gene expression data were generated with Affymetrix U133A gene chips and normalized with RMA algorithm using the ‘affy’ R package. ..

    Article Title: Novel biomarkers and interferon signature in secondary progressive multiple sclerosis.
    Article Snippet: Multiple sclerosis (MS) exhibits poor immune regulation and subnormal interferon (IFN-β) signaling.. Secondary Progressive MS displays waning exacerbations, relentless neurodegeneration, and diminished benefit of therapy.. We find dysregulated serum protein balance (Th1/Th2) and excessive gene expression in Relapsing-Remitting MS vs. healthy controls (8700 differentially-expressed genes, DEG) and intermediate levels in SPMS (3900 DEG).

    Microarray:

    Article Title: Novel biomarkers and interferon signature in secondary progressive multiple sclerosis.
    Article Snippet: Multiple sclerosis (MS) exhibits poor immune regulation and subnormal interferon (IFN-β) signaling.. Secondary Progressive MS displays waning exacerbations, relentless neurodegeneration, and diminished benefit of therapy.. We find dysregulated serum protein balance (Th1/Th2) and excessive gene expression in Relapsing-Remitting MS vs. healthy controls (8700 differentially-expressed genes, DEG) and intermediate levels in SPMS (3900 DEG).

    Article Title: Genomic expression during human myelopoiesis
    Article Snippet: .. In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation. ..

    Article Title: Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs
    Article Snippet: .. Raw Affymetrix microarray data (CEL files) of human ICC and GIST samples were downloaded from GEO, under accessions GSE56670 , GSE77839 , GSE17743 , and GSE20708 . ..

    Article Title: Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray
    Article Snippet: .. A gene expression index was build for stress treatments comparison in a manner reminiscent of the Hormonometer algorithm : Affymetrix ATH1 microarray CEL files (containing raw data) of stress related experiments were retrieved from GEO. .. They were imported into Partek GS (Partek, Inc.) , RMA normalized and then the fold-change (treatment/control) of the genes and the statistical significance (using one-way ANOVA test) of that change were calculated.

    Article Title: Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean
    Article Snippet: Microarray data were analyzed using Expressionist Pro software from Genedata Inc. .. Raw data in the form of .CEL files from the Affymetrix ® GeneChip were uploaded to the platform, and the robust microarray analysis (RMA) algorithm [ ] was used to condense and normalize all soybean probeset data with a median of ten thousand. ..

    Software:

    Article Title: Novel biomarkers and interferon signature in secondary progressive multiple sclerosis.
    Article Snippet: Multiple sclerosis (MS) exhibits poor immune regulation and subnormal interferon (IFN-β) signaling.. Secondary Progressive MS displays waning exacerbations, relentless neurodegeneration, and diminished benefit of therapy.. We find dysregulated serum protein balance (Th1/Th2) and excessive gene expression in Relapsing-Remitting MS vs. healthy controls (8700 differentially-expressed genes, DEG) and intermediate levels in SPMS (3900 DEG).

    Expressing:

    Article Title: Genomic expression during human myelopoiesis
    Article Snippet: .. In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation. ..

    Cell Differentiation:

    Article Title: Genomic expression during human myelopoiesis
    Article Snippet: .. In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation. ..

    Immunocytochemistry:

    Article Title: Altered chromosomal topology drives oncogenic programs in SDH-deficient GISTs
    Article Snippet: .. Raw Affymetrix microarray data (CEL files) of human ICC and GIST samples were downloaded from GEO, under accessions GSE56670 , GSE77839 , GSE17743 , and GSE20708 . ..

    Comparison:

    Article Title: Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray
    Article Snippet: .. A gene expression index was build for stress treatments comparison in a manner reminiscent of the Hormonometer algorithm : Affymetrix ATH1 microarray CEL files (containing raw data) of stress related experiments were retrieved from GEO. .. They were imported into Partek GS (Partek, Inc.) , RMA normalized and then the fold-change (treatment/control) of the genes and the statistical significance (using one-way ANOVA test) of that change were calculated.



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    Image Search Results


    Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Journal: BMC Genomics

    Article Title: Genomic expression during human myelopoiesis

    doi: 10.1186/1471-2164-8-264

    Figure Lengend Snippet: Gene expression dataset . A) The gene expression dataset analyzed comprises cell samples from different levels of myeloid differentiation process (stem/progenitor cells, precursors and terminally differentiated cells). The graph describes relationships between the cellular contexts analyzed within myeloid differentiation tree. For each cell type, the number of samples examined with independent microarray experiments is indicated in brackets. B) Dendrogram obtained by unsupervised hierarchical clustering on gene expression data matrix. Pearson correlation and average were used as similarity measure and linking method, respectively.

    Article Snippet: In particular, raw microarray data (Affymetrix .CEL files) were obtained for a total of 24 samples from 8 different cell types of all myelopoietic lineages, representing a reference dataset for a comprehensive analysis of genomic expression during cell differentiation.

    Techniques: Expressing, Microarray